PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_2951D8114.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 291aa    MW: 32310.5 Da    PI: 4.8617
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_2951D8114.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.45.9e-551132171102
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql+ fw++q   ie+atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Traes_6BS_2951D8114.2 113 QLREFWATQmeeIEQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITR 200
                            89*****996677899************************************************************************ PP

                  NF-YC  86 tdifdflvdivprdelk 102
                            tdi+dflvdi+prd++k
  Traes_6BS_2951D8114.2 201 TDIYDFLVDIIPRDDMK 217
                            **************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3009.3E-486127IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF471132.68E-3393207IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.9E-37128199IPR009072Histone-fold
PfamPF008089.9E-21135198IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MCSDNLSLFG ILRSTFSDEI LSDRKIFGFA RTRSHMEPSS QPEPVVGVAT AGSQAYPPPA  60
AYPAPAMPAA IPPGSQPAVP FPANPAQLSA QHQLVYQQAQ QFHQQLQQQQ QQQLREFWAT  120
QMEEIEQATD FKNHTLPLAR IKKIMKADED VRMISAEAPV VFAKACEVFI LELTLRSWMH  180
TEENKRRTLQ KNDIAAAITR TDIYDFLVDI IPRDDMKEEG LGLPRVGLPP AALGAPADAY  240
PPYYYVPAQQ VPGVGMMYGG QQGHPVAYAW QQPQGQQAEE APEEQQQSPS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B4e-42120213297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185191RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787320.0KM078732.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-A7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570159.11e-133PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG72e-72NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLW5GPQ50.0W5GPQ5_WHEAT; Uncharacterized protein
STRINGMLOC_53118.11e-155(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.26e-65nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]